Here is the current MLB.com list. I don't know when they updated it. They are still bullish on Williams despite his dismal season, #3 Phillies prospect and #48 overall. They are also still relatively bullish on Appel (#10 Phillies prospect).
For the record, the top 10 is 1. Crawford, 2. Moniak, 3. Williams, 4. Alfaro, 5. Randolph, 6. Cozens, 7. Quinn, 8. Kilome, 9. Gowdy, 10. Appel.
The only top 100's are Crawford (#2), Moniak (#24), Williams (#48) and Alfaro (#58).
Thompson has been deemed graduated.
m.mlb.com/prospects/2016?list=phi