Flyers wasn't even talking about this year. He said "lead guy in the BP next season." Which, yes, is even harder to project if he doesn't even throw a pitch this season, or is not all that effective (in what will also likely be low-leverage work).
Obviously they will tender him, having stuck with him for the past two years.
Do guys come back from TJ great guns, or does it often take a year of recovery/adjustment? Adam Morgan is finally pitching well for the Cubs, incidentally.